IL_8T3D_078
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8T3D|1|A1|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_078 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1125
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8T3D|1|A1|C|1918
8T3D|1|A1|G|1919
8T3D|1|A1|U|1920
8T3D|1|A1|A|1921
8T3D|1|A1|A|1922
8T3D|1|A1|C|1923
*
8T3D|1|A1|G|1928
8T3D|1|A1|G|1929
8T3D|1|A1|A|1930
8T3D|1|A1|U|1931
8T3D|1|A1|A|1932
8T3D|1|A1|A|1933
8T3D|1|A1|G|1934
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain An
- 60S ribosomal protein L41-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: