IL_8T3D_086

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_086 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0959

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8T3D|1|A1|U|2211
8T3D|1|A1|C|2212
8T3D|1|A1|A|2213
8T3D|1|A1|A|2214
8T3D|1|A1|A|2215
8T3D|1|A1|G|2216
8T3D|1|A1|U|2217
*
8T3D|1|A1|A|2228
8T3D|1|A1|A|2229
8T3D|1|A1|C|2230
8T3D|1|A1|C|2231
8T3D|1|A1|A|2232
8T3D|1|A1|A|2233
8T3D|1|A1|G|2234

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain Ao

60S ribosomal protein L42-A