IL_8T3D_090

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8T3D|1|A1|A|2397, 8T3D|1|A1|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_090 not in the Motif Atlas

Homologous match to IL_8P9A_320

Geometric discrepancy: 0.1503

The information below is about IL_8P9A_320

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8T3D|1|A1|G|2396
8T3D|1|A1|A|2397
8T3D|1|A1|A|2398
*
8T3D|1|A1|U|2981
8T3D|1|A1|A|2982
8T3D|1|A1|C|2983
8T3D|1|A1|C|2984

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A