IL_8T3D_094
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAUA*UAUAG
- Length
- 9 nucleotides
- Bulged bases
- 8T3D|1|A1|A|2502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_094 not in the Motif Atlas
- Geometric match to IL_1L9A_005
- Geometric discrepancy: 0.285
- The information below is about IL_1L9A_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8T3D|1|A1|C|2444
8T3D|1|A1|A|2445
8T3D|1|A1|U|2446
8T3D|1|A1|A|2447
*
8T3D|1|A1|U|2499
8T3D|1|A1|A|2500
8T3D|1|A1|U|2501
8T3D|1|A1|A|2502
8T3D|1|A1|G|2503
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain Ai
- 60S ribosomal protein L36-A
- Chain E
- RPL1A isoform 1
Coloring options: