3D structure

PDB id
8T3D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.95 Å

Loop

Sequence
UUGA*(PSU)ACA
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T3D_102 not in the Motif Atlas
Homologous match to IL_8C3A_109
Geometric discrepancy: 0.1163
The information below is about IL_8C3A_109
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

8T3D|1|A1|U|2718
8T3D|1|A1|U|2719
8T3D|1|A1|G|2720
8T3D|1|A1|A|2721
*
8T3D|1|A1|PSU|2735
8T3D|1|A1|A|2736
8T3D|1|A1|C|2737
8T3D|1|A1|A|2738

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AD
RPL5 isoform 1
Chain AQ
60S ribosomal protein L18-A
Chain AT
60S ribosomal protein L21-A
Chain Ab
RPL29 isoform 1
Chain Ao
60S ribosomal protein L42-A

Coloring options:


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