IL_8T3D_123

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8T3D|1|A1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_123 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1038

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8T3D|1|A1|A|3103
8T3D|1|A1|U|3104
8T3D|1|A1|U|3105
8T3D|1|A1|A|3106
8T3D|1|A1|U|3107
*
8T3D|1|A1|A|3127
8T3D|1|A1|G|3128
8T3D|1|A1|A|3129
8T3D|1|A1|A|3130
8T3D|1|A1|U|3131

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L16-A

Chain Am

Ubiquitin-60S ribosomal protein L40