IL_8T3D_127
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8T3D|1|A1|A|3180, 8T3D|1|A1|A|3186, 8T3D|1|A1|U|3207, 8T3D|1|A1|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_127 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.1308
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42231.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-cSS-L
- Number of instances in this motif group
- 2
Unit IDs
8T3D|1|A1|U|3179
8T3D|1|A1|A|3180
8T3D|1|A1|C|3181
8T3D|1|A1|G|3182
8T3D|1|A1|A|3183
8T3D|1|A1|A|3184
8T3D|1|A1|U|3185
8T3D|1|A1|A|3186
8T3D|1|A1|A|3187
8T3D|1|A1|G|3188
*
8T3D|1|A1|C|3204
8T3D|1|A1|G|3205
8T3D|1|A1|C|3206
8T3D|1|A1|U|3207
8T3D|1|A1|G|3208
8T3D|1|A1|A|3209
8T3D|1|A1|A|3210
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AE
- 60S ribosomal protein L6-A
- Chain AH
- 60S ribosomal protein L9-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain AS
- 60S ribosomal protein L20
- Chain Af
- 60S ribosomal protein L33-A
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