IL_8T3D_146
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 8T3D|1|A3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_146 not in the Motif Atlas
- Homologous match to IL_8C3A_149
- Geometric discrepancy: 0.0937
- The information below is about IL_8C3A_149
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8T3D|1|A3|A|84
8T3D|1|A3|G|85
8T3D|1|A3|U|86
8T3D|1|A3|G|87
*
8T3D|1|A3|C|94
8T3D|1|A3|A|95
8T3D|1|A3|U|96
Current chains
- Chain A3
- 5s rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AF
- 60S ribosomal protein L7-A
- Chain AI
- 60S ribosomal protein L10
- Chain AS
- 60S ribosomal protein L20
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