IL_8T3D_215

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_215 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.1188

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8T3D|1|B5|C|1306
8T3D|1|B5|U|1307
8T3D|1|B5|G|1308
*
8T3D|1|B5|C|1317
8T3D|1|B5|G|1318

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BR

40S ribosomal protein S17-A

Chain Ba

RPS26B isoform 1