IL_8T3D_235
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_235 not in the Motif Atlas
- Homologous match to IL_8C3A_480
- Geometric discrepancy: 0.1446
- The information below is about IL_8C3A_480
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8T3D|1|B5|A|1678
8T3D|1|B5|G|1679
8T3D|1|B5|G|1680
8T3D|1|B5|A|1681
8T3D|1|B5|U|1682
*
8T3D|1|B5|A|1719
8T3D|1|B5|G|1720
8T3D|1|B5|A|1721
8T3D|1|B5|A|1722
8T3D|1|B5|U|1723
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AW
- RPL24A isoform 1
- Chain BG
- 40S ribosomal protein S6-A
- Chain BI
- 40S ribosomal protein S8-A
Coloring options: