IL_8T3D_245
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GAAAAAAU(PSU)*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8T3D|1|B5|U|794, 8T3D|1|B5|U|795
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_245 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.3358
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8T3D|1|B5|G|751
8T3D|1|B5|A|752
8T3D|1|B5|A|753
8T3D|1|B5|A|754
8T3D|1|B5|A|755
8T3D|1|B5|A|756
8T3D|1|B5|A|757
8T3D|1|B5|U|758
8T3D|1|B5|PSU|759
*
8T3D|1|B5|A|791
8T3D|1|B5|U|792
8T3D|1|B5|A|793
8T3D|1|B5|U|794
8T3D|1|B5|U|795
8T3D|1|B5|A|796
8T3D|1|B5|G|797
8T3D|1|B5|C|798
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BW
- RPS22A isoform 1
Coloring options: