IL_8T3E_040
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- AUUA*U(PSU)CU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3E_040 not in the Motif Atlas
- Homologous match to IL_8P9A_269
- Geometric discrepancy: 0.1961
- The information below is about IL_8P9A_269
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
8T3E|1|A1|A|1006
8T3E|1|A1|U|1007
8T3E|1|A1|U|1008
8T3E|1|A1|A|1009
*
8T3E|1|A1|U|1041
8T3E|1|A1|PSU|1042
8T3E|1|A1|C|1043
8T3E|1|A1|U|1044
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- RPL5 isoform 1
- Chain AI
- 60S ribosomal protein L10
Coloring options: