IL_8T3E_084
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- 8T3E|1|A1|U|2209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3E_084 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.3147
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8T3E|1|A1|G|2206
8T3E|1|A1|A|2207
8T3E|1|A1|A|2208
8T3E|1|A1|U|2209
8T3E|1|A1|G|2210
*
8T3E|1|A1|C|2235
8T3E|1|A1|G|2236
8T3E|1|A1|C|2237
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: