IL_8T3E_102

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGC(PSU)*GA(PSU)UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_102 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.1306

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8T3E|1|A1|G|2823
8T3E|1|A1|G|2824
8T3E|1|A1|C|2825
8T3E|1|A1|PSU|2826
*
8T3E|1|A1|G|2863
8T3E|1|A1|A|2864
8T3E|1|A1|PSU|2865
8T3E|1|A1|U|2866
8T3E|1|A1|C|2867

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AI

60S ribosomal protein L10

Chain Ab

RPL29 isoform 1