IL_8T3E_156

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8T3E|1|B5|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_156 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1821

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8T3E|1|B5|G|143
8T3E|1|B5|U|144
8T3E|1|B5|A|145
8T3E|1|B5|U|146
8T3E|1|B5|A|147
8T3E|1|B5|A|148
8T3E|1|B5|C|149
*
8T3E|1|B5|G|165
8T3E|1|B5|C|166
8T3E|1|B5|U|167
8T3E|1|B5|A|168
8T3E|1|B5|A|169
8T3E|1|B5|U|170
8T3E|1|B5|A|171
8T3E|1|B5|C|172

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BY

40S ribosomal protein S24-A