IL_8T3E_163

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8T3E|1|B5|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_163 not in the Motif Atlas

Homologous match to IL_8C3A_409

Geometric discrepancy: 0.2921

The information below is about IL_8C3A_409

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8T3E|1|B5|C|275
8T3E|1|B5|C|276
*
8T3E|1|B5|G|279
8T3E|1|B5|U|280
8T3E|1|B5|G|281

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A