IL_8T3F_046
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 8T3F|1|A1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3F_046 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.0888
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8T3F|1|A1|U|1167
8T3F|1|A1|U|1168
8T3F|1|A1|A|1169
8T3F|1|A1|A|1170
8T3F|1|A1|G|1171
*
8T3F|1|A1|C|1328
8T3F|1|A1|U|1329
8T3F|1|A1|A|1330
8T3F|1|A1|U|1331
8T3F|1|A1|A|1332
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S ribosomal protein L7-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Ae
- RPL32 isoform 1
- Chain Af
- 60S ribosomal protein L33-A
Coloring options: