IL_8T3F_135

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8T3F|1|A1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3F_135 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0813

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8T3F|1|A1|U|3332
8T3F|1|A1|G|3333
8T3F|1|A1|U|3334
8T3F|1|A1|A|3335
8T3F|1|A1|A|3336
8T3F|1|A1|G|3337
*
8T3F|1|A1|C|3367
8T3F|1|A1|U|3368
8T3F|1|A1|G|3369
8T3F|1|A1|A|3370
8T3F|1|A1|G|3371

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

RPL24A isoform 1

Chain Ad

60S ribosomal protein L31-A