IL_8T3F_152

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3F_152 not in the Motif Atlas

Homologous match to IL_8C3A_396

Geometric discrepancy: 0.0729

The information below is about IL_8C3A_396

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8T3F|1|B5|C|50
8T3F|1|B5|A|51
8T3F|1|B5|U|52
*
8T3F|1|B5|A|428
8T3F|1|B5|G|429

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BY

40S ribosomal protein S24-A

Chain DC

Elongation factor 2