IL_8T3F_176

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3F_176 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.111

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8T3F|1|B5|A|550
8T3F|1|B5|G|551
8T3F|1|B5|G|552
8T3F|1|B5|G|553
8T3F|1|B5|C|554
8T3F|1|B5|A|555
8T3F|1|B5|A|556
8T3F|1|B5|G|557
*
8T3F|1|B5|C|587
8T3F|1|B5|U|588

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

RPS2 isoform 1

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A