IL_8T3F_178
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8T3F|1|B5|A|579, 8T3F|1|B5|U|581, 8T3F|1|B5|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3F_178 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.253
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8T3F|1|B5|G|562
8T3F|1|B5|U|563
8T3F|1|B5|G|564
8T3F|1|B5|C|565
8T3F|1|B5|C|566
8T3F|1|B5|A|567
8T3F|1|B5|G|568
*
8T3F|1|B5|C|575
8T3F|1|B5|G|576
8T3F|1|B5|G|577
8T3F|1|B5|U|578
8T3F|1|B5|A|579
8T3F|1|B5|A|580
8T3F|1|B5|U|581
8T3F|1|B5|U|582
8T3F|1|B5|C|583
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain DC
- Elongation factor 2
Coloring options: