IL_8T3F_188

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

8T3F|1|B5|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3F_188 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.3707

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8T3F|1|B5|G|867
8T3F|1|B5|G|868
8T3F|1|B5|A|869
*
8T3F|1|B5|U|958
8T3F|1|B5|U|959
8T3F|1|B5|U|960
8T3F|1|B5|U|961

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain BW

RPS22A isoform 1

Chain Bb

40S ribosomal protein S27-A