IL_8T4S_013

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8T4S|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_013 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.0825

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8T4S|1|2|G|145
8T4S|1|2|G|146
8T4S|1|2|A|147
8T4S|1|2|U|148
8T4S|1|2|A|149
8T4S|1|2|A|150
8T4S|1|2|C|151
*
8T4S|1|2|G|167
8T4S|1|2|C|168
8T4S|1|2|U|169
8T4S|1|2|A|170
8T4S|1|2|A|171
8T4S|1|2|U|172
8T4S|1|2|A|173
8T4S|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24