IL_8T4S_030

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GACUC*GAGGCC

Length

11 nucleotides

Bulged bases

8T4S|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_030 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.3905

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8T4S|1|2|G|535
8T4S|1|2|A|536
8T4S|1|2|C|537
8T4S|1|2|U|538
8T4S|1|2|C|539
*
8T4S|1|2|G|544
8T4S|1|2|A|545
8T4S|1|2|G|546
8T4S|1|2|G|547
8T4S|1|2|C|548
8T4S|1|2|C|549

Current chains

Chain 2

18S rRNA

Nearby chains

Chain e

FAU ubiquitin-like and ribosomal protein S30