IL_8T4S_037

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8T4S|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_037 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1261

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8T4S|1|2|G|665
8T4S|1|2|U|666
8T4S|1|2|U|667
8T4S|1|2|A|668
8T4S|1|2|A|669
8T4S|1|2|A|670
8T4S|1|2|A|671
*
8T4S|1|2|U|1161
8T4S|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain a

40S ribosomal protein S26