IL_8T4S_048

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_048 not in the Motif Atlas

Homologous match to IL_8C3A_437

Geometric discrepancy: 0.0735

The information below is about IL_8C3A_437

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8T4S|1|2|G|928
8T4S|1|2|G|929
8T4S|1|2|C|930
8T4S|1|2|C|931
*
8T4S|1|2|G|1010
8T4S|1|2|A|1011
8T4S|1|2|A|1012
8T4S|1|2|U|1013

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27