IL_8T4S_051

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8T4S|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_051 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1915

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8T4S|1|2|G|952
8T4S|1|2|C|953
8T4S|1|2|U|954
8T4S|1|2|A|955
8T4S|1|2|G|956
*
8T4S|1|2|C|967
8T4S|1|2|U|968
8T4S|1|2|U|969
8T4S|1|2|G|970
8T4S|1|2|G|971
8T4S|1|2|A|972
8T4S|1|2|C|973
8T4S|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14