IL_8T4S_070

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_070 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.0982

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8T4S|1|2|U|1347
8T4S|1|2|G|1348
8T4S|1|2|G|1349
*
8T4S|1|2|C|1380
8T4S|1|2|G|1381
8T4S|1|2|A|1382

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain C

40S ribosomal protein S2

Chain D

40S ribosomal protein S3

Chain R

40S ribosomal protein S17