IL_8T4S_084

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

8T4S|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_084 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3903

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8T4S|1|2|C|1708
8T4S|1|2|G|1709
8T4S|1|2|C|1710
8T4S|1|2|U|1711
*
8T4S|1|2|A|1822
8T4S|1|2|A|1823
8T4S|1|2|A|1824
8T4S|1|2|A|1825
8T4S|1|2|G|1826

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

60S ribosomal protein L41