IL_8T4S_091

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_091 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1512

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8T4S|1|2|C|1742
8T4S|1|2|G|1743
8T4S|1|2|G|1744
8T4S|1|2|A|1745
8T4S|1|2|U|1746
*
8T4S|1|2|A|1788
8T4S|1|2|G|1789
8T4S|1|2|A|1790
8T4S|1|2|A|1791
8T4S|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8