IL_8T5D_002
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- 8T5D|1|A|U|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5D_002 not in the Motif Atlas
- Homologous match to IL_7A0S_103
- Geometric discrepancy: 0.2044
- The information below is about IL_7A0S_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8T5D|1|A|G|23
8T5D|1|A|G|24
8T5D|1|A|U|25
8T5D|1|A|C|26
8T5D|1|A|C|27
8T5D|1|A|C|28
*
8T5D|1|A|G|56
8T5D|1|A|A|57
8T5D|1|A|A|58
8T5D|1|A|A|59
8T5D|1|A|C|60
Current chains
- Chain A
- 5S RNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
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