IL_8T5D_012
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5D_012 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.084
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8T5D|1|B|C|239
8T5D|1|B|C|240
8T5D|1|B|A|241
8T5D|1|B|G|242
8T5D|1|B|U|243
8T5D|1|B|A|244
8T5D|1|B|G|245
*
8T5D|1|B|C|253
8T5D|1|B|G|254
8T5D|1|B|A|255
8T5D|1|B|A|256
8T5D|1|B|C|257
8T5D|1|B|G|258
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
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