IL_8T5D_016

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_016 not in the Motif Atlas

Homologous match to IL_4WF9_014

Geometric discrepancy: 0.1545

The information below is about IL_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8T5D|1|B|U|293
8T5D|1|B|A|294
8T5D|1|B|G|295
*
8T5D|1|B|C|343
8T5D|1|B|A|344
8T5D|1|B|A|345
8T5D|1|B|A|346
8T5D|1|B|A|347

Current chains

Chain B

23S RNA

Nearby chains

Chain U

50S ribosomal protein L24

Chain Y

50S ribosomal protein L29