IL_8T5D_025

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_025 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.0962

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8T5D|1|B|U|703
8T5D|1|B|G|704
8T5D|1|B|A|705
8T5D|1|B|A|706
8T5D|1|B|G|707
*
8T5D|1|B|U|724
8T5D|1|B|G|725
8T5D|1|B|G|726
8T5D|1|B|A|727
8T5D|1|B|G|728

Current chains

Chain B

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2