IL_8T5D_048

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8T5D|1|B|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_048 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1072

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8T5D|1|B|C|1196
8T5D|1|B|G|1197
8T5D|1|B|U|1198
*
8T5D|1|B|A|1247
8T5D|1|B|G|1248
8T5D|1|B|U|1249
8T5D|1|B|G|1250

Current chains

Chain B

23S RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20