IL_8T5D_050

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8T5D|1|B|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_050 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1079

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8T5D|1|B|C|1208
8T5D|1|B|U|1209
8T5D|1|B|G|1210
8T5D|1|B|C|1211
8T5D|1|B|G|1212
8T5D|1|B|A|1213
8T5D|1|B|A|1214
8T5D|1|B|G|1215
*
8T5D|1|B|U|1234
8T5D|1|B|G|1235
8T5D|1|B|G|1236
8T5D|1|B|A|1237
8T5D|1|B|G|1238

Current chains

Chain B

23S RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22