IL_8T5D_053

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_053 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1817

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8T5D|1|B|C|1319
8T5D|1|B|C|1320
8T5D|1|B|A|1321
8T5D|1|B|A|1322
8T5D|1|B|C|1323
*
8T5D|1|B|G|1331
8T5D|1|B|G|1332
8T5D|1|B|G|1333

Current chains

Chain B

23S RNA

Nearby chains

Chain S

50S ribosomal protein L22