IL_8T5D_061

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_061 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1283

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8T5D|1|B|U|1474
8T5D|1|B|G|1475
8T5D|1|B|U|1476
8T5D|1|B|A|1477
8T5D|1|B|G|1478
*
8T5D|1|B|U|1513
8T5D|1|B|G|1514
8T5D|1|B|A|1515
8T5D|1|B|G|1516
8T5D|1|B|G|1517

Current chains

Chain B

23S RNA

Nearby chains