IL_8T5D_149
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 8T5D|1|v|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5D_149 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.0831
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8T5D|1|v|U|662
8T5D|1|v|A|663
8T5D|1|v|G|664
8T5D|1|v|A|665
8T5D|1|v|G|666
*
8T5D|1|v|U|740
8T5D|1|v|G|741
8T5D|1|v|G|742
8T5D|1|v|A|743
Current chains
- Chain v
- 16s RNA
Nearby chains
- Chain e
- 30S ribosomal protein S6, non-modified isoform
- Chain n
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S18
Coloring options: