IL_8T5H_014

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_014 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.5022

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8T5H|1|B|C|274
8T5H|1|B|C|275
8T5H|1|B|U|276
8T5H|1|B|G|277
8T5H|1|B|A|278
8T5H|1|B|A|279
8T5H|1|B|U|280
8T5H|1|B|C|281
*
8T5H|1|B|G|359
8T5H|1|B|U|360
8T5H|1|B|G|361
8T5H|1|B|A|362
8T5H|1|B|G|363

Current chains

Chain B

23S

Nearby chains