IL_8T5H_049

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8T5H|1|B|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_049 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.2833

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

8T5H|1|B|G|1202
8T5H|1|B|U|1203
8T5H|1|B|A|1204
8T5H|1|B|A|1205
8T5H|1|B|G|1206
*
8T5H|1|B|U|1240
8T5H|1|B|A|1241
8T5H|1|B|U|1242
8T5H|1|B|C|1243

Current chains

Chain B

23S

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15