IL_8T5H_057

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8T5H|1|B|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_057 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1316

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8T5H|1|B|C|1417
8T5H|1|B|G|1418
8T5H|1|B|A|1419
8T5H|1|B|A|1420
8T5H|1|B|G|1421
*
8T5H|1|B|C|1577
8T5H|1|B|U|1578
8T5H|1|B|A|1579
8T5H|1|B|A|1580
8T5H|1|B|G|1581

Current chains

Chain B

23S

Nearby chains