IL_8T5H_069

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8T5H|1|B|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_069 not in the Motif Atlas

Homologous match to IL_8VTW_067

Geometric discrepancy: 0.0897

The information below is about IL_8VTW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8T5H|1|B|C|1686
8T5H|1|B|G|1687
8T5H|1|B|U|1688
8T5H|1|B|A|1689
8T5H|1|B|A|1690
8T5H|1|B|C|1691
*
8T5H|1|B|G|1696
8T5H|1|B|G|1697
8T5H|1|B|A|1698
8T5H|1|B|G|1699
8T5H|1|B|A|1700
8T5H|1|B|A|1701
8T5H|1|B|G|1702

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA