IL_8T5H_070

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8T5H|1|B|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_070 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1079

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8T5H|1|B|U|1712
8T5H|1|B|A|1713
8T5H|1|B|U|1714
8T5H|1|B|G|1715
8T5H|1|B|U|1716
8T5H|1|B|A|1717
8T5H|1|B|G|1718
*
8T5H|1|B|U|1742
8T5H|1|B|G|1743
8T5H|1|B|A|1744
8T5H|1|B|A|1745
8T5H|1|B|A|1746

Current chains

Chain B

23S

Nearby chains