IL_8T5H_077

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_077 not in the Motif Atlas

Homologous match to IL_8VTW_072

Geometric discrepancy: 0.2479

The information below is about IL_8VTW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8T5H|1|B|G|1846
8T5H|1|B|A|1847
8T5H|1|B|A|1848
8T5H|1|B|G|1849
*
8T5H|1|B|C|1893
8T5H|1|B|C|1894

Current chains

Chain B

23S

Nearby chains

Chain v

Small subunit ribosomal RNA; SSU rRNA