3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGU*AUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_090 not in the Motif Atlas
Geometric match to IL_6IA2_002
Geometric discrepancy: 0.158
The information below is about IL_6IA2_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8T5H|1|B|G|2396
8T5H|1|B|G|2397
8T5H|1|B|U|2398
*
8T5H|1|B|A|2418
8T5H|1|B|U|2419
8T5H|1|B|C|2420

Current chains

Chain B
23S

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2651 s