IL_8T5H_096
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5H_096 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.1322
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8T5H|1|B|C|2466
8T5H|1|B|C|2467
8T5H|1|B|A|2468
8T5H|1|B|A|2469
8T5H|1|B|G|2470
*
8T5H|1|B|C|2480
8T5H|1|B|G|2481
8T5H|1|B|A|2482
8T5H|1|B|C|2483
8T5H|1|B|G|2484
Current chains
- Chain B
- 23S
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain M
- 50S ribosomal protein L16
Coloring options: