IL_8T5H_125

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_125 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.1365

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8T5H|1|v|C|132
8T5H|1|v|U|133
8T5H|1|v|G|134
8T5H|1|v|C|135
8T5H|1|v|C|136
*
8T5H|1|v|G|227
8T5H|1|v|A|228
8T5H|1|v|U|229
8T5H|1|v|G|230

Current chains

Chain v

16S

Nearby chains

Chain o

30S ribosomal protein S16

Chain s

30S ribosomal protein S20