IL_8T5H_135

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_135 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2661

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8T5H|1|v|U|409
8T5H|1|v|G|410
8T5H|1|v|A|411
8T5H|1|v|A|412
8T5H|1|v|G|413
8T5H|1|v|A|414
8T5H|1|v|A|415
8T5H|1|v|G|416
*
8T5H|1|v|U|427
8T5H|1|v|G|428
8T5H|1|v|U|429
8T5H|1|v|A|430
8T5H|1|v|A|431
8T5H|1|v|A|432
8T5H|1|v|G|433

Current chains

Chain v

16S

Nearby chains

Chain c

30S ribosomal protein S4