IL_8T5H_137

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8T5H|1|v|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_137 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1272

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8T5H|1|v|G|446
8T5H|1|v|G|447
8T5H|1|v|A|448
8T5H|1|v|G|449
8T5H|1|v|G|450
*
8T5H|1|v|C|483
8T5H|1|v|G|484
8T5H|1|v|U|485
8T5H|1|v|U|486
8T5H|1|v|A|487
8T5H|1|v|C|488

Current chains

Chain v

16S

Nearby chains

Chain c

30S ribosomal protein S4

Chain o

30S ribosomal protein S16